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Intune vs SCCM: A Comparison of Microsoft Solutions

by Makenzie Buenning, IT Editorial Expert
reviewed by Aldwin Rodriguez, Technical Marketing Engineer
Illustrations of Intune and SCCM representing Intune vs SCCM, a comparison of solutions.

Key Points

  • Intune: Cloud-based MDM for managing iOS, Android, and modern Windows devices.
  • SCCM: On-premises configuration manager for Windows servers and desktops.
  • Key Differences: Intune is cloud-based and mobile-focused and integrates with Azure; SCCM is on-prem, Windows-centric, and better for complex environments.
  • Which to Choose? Use Intune for mobile and remote work and SCCM for large on-prem infrastructures.
  • Alternative – NinjaOne: Cloud-based endpoint management with full endpoint visibility, remote access, and no forced commitments.

Figuring out which software solution will meet the needs of your organization’s IT environment can be a big challenge. There are many factors to consider before making a final decision, and one is to learn what software solutions are available.

Intune and SCCM are two Microsoft solutions that help you manage the devices in your IT environment. Find out what each software solution does, how Intune vs SCCM compare, and which is right for you.

Prefer video? Watch our video on Intune vs. SCCM here.

A quick note about these products: Microsoft has been in the midst of product name changes, so it’s probably been a little hard to keep track of everything. This announcement was posted on the Microsoft Intune blog with the latest update on the Intune product family.

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What is Intune?

Intune, previously part of Microsoft Endpoint Manager (MEM), is Microsoft’s endpoint management solution. It’s a cloud-based mobile device management (MDM) tool that allows you to manage devices for highly homogeneous environments. You can see a variety of devices with end-user operating systems, such as workstations, laptops, tablets, and mobile devices. Intune also supports a hybrid workforce.

Furthermore, Intune uses a profile-based approach to device management, with profiles defined by the operating system manufacturer. This allows for a more streamlined and efficient solution for managing mobile devices.

As with every MDM solution, Intune operates within the framework of the APIs provided by Microsoft. While this ensures more streamlined and consistent management, it may limit flexibility to customize actions beyond the scope of what these APIs support.

What is SCCM?

System Center Configuration Manager (SCCM), on the other hand, is now part of MEM and is currently at version 2503, referred to as Configuration Manager.

To assess the difference between SCCM and Intune fully, we must first investigate the versions of SCCM.

Classic SCCMConfiguration Manager
Referred to as ConfigMgr or System Center Configuration Manager  Rebranded as part of MEM. Referred to simply as ConfigMgr or MEMCM.
Entirely on-premises with no integration to cloud services like IntuneAllows for the integration of Intune and SCCM, enabling IT pros to manage both cloud-based and on-premises devices from a single pane of glass.
Feature updates were relatively slower and relied more on manual updatesSCCM receives regular updates (generally three times a year), known as current branch updates.
Provides cloud attach features that integrate with Azure. This allows for better cloud-based management and reporting.

 

SCCM is a traditional endpoint manager for organizations with on-prem servers and a traditional on-prem workforce. It’s used to manage complex heterogeneous environments with endpoints like servers, laptops, and workstations.

SCCM also uses an agent-based approach to endpoint management. This means it installs agents onto each endpoint device, giving administrators remote access to it and allowing them to perform almost any task an administrator can do locally. This is possible because SCCM provides built-in scripts and tools that simplify complex administrative tasks. Essentially, SCCM grants comparable control over a device to that of an administrator.

However, SCCM can be quite complex and requires significant setup and ongoing management, making it much more suitable for larger organizations that have the necessary resources to effectively maintain it.

Intune vs. SCCM

As you can see, any discussion about SCCM vs Intune can become easily confusing due to the nuances of each software tool. Is Intune SCCM? Is SCCM Intune? What are the key differences between Microsoft Intune vs SCCM, and the different versions of the latter? To answer these questions, let’s compare the main features of each Microsoft solution.

CriteriaIntuneSCCM
Deployment type and flexibilityCloud-based deployments, BYOD support, and remote work scenariosOn-premises deployment
Device types Mobile devices (iOS, Android), modern PCsPrimarily Windows desktops, servers, and enterprise workstations
Update management Focuses on Windows Update for Business and cloud-based updatesComprehensive patching and software updates for on-premises environments
Integration capabilities Fully integrates with Azure AD (now known as Microsoft Entra ID), Microsoft 365, Defender, and other cloud servicesMinimal integration with cloud services
ScalabilityHighly scalableLimited scalability
Automation and scriptingSupports PowerShell and automation for cloud-based tasksExtensive support for PowerShell, Task Sequences, and automation for on-premises devices
User experienceSimple UI for mobile-first environmentsBetter suited for more experienced IT professionals
Compliance and reportingDetailed cloud-based complianceOn-premises reporting through SQL and SSRS
Community supportStrong official support, which you can see in Microsoft docsOlder forums, with many resources focused on traditional desktop management
Total cost of ownershipSubscription-based pricing model, low upfront infrastructure cost but requires ongoing paymentsHigh upfront cost for on-premises infrastructure and licenses

As you can see in the table, Intune vs. SCCM is not as black and white as more traditional comparison guides.

Although the two solutions can serve very different functions, some overlap exists. Both Intune and SCCM can do the following tasks, but they accomplish these tasks in different ways since Intune is cloud-based and SCCM is agent-based:

  • Manage applications: Intune and SCCM can update, install, or uninstall applications on end-user devices.
  • Deploy scripts: Both solutions can push code to existing programs or code and modify configurations.
  • Manipulate users: SCCM and Intune manage end users and have the power to control access on their devices.
  • Deploy and apply patches: Each solution can apply software updates and patch systems.

Which Microsoft solution should you use?

Intune vs. SCCM is like comparing apples to oranges, but they come from the same tree (Microsoft). Each solution serves a different purpose and different devices, and choosing which solution to use depends on your organization’s IT needs.

  • Use Intune if you have many different endpoints in various locations to manage or if you’re looking for a straightforward management solution.
  • If you’re part of a large organization that needs on-premises device and server management for a complex IT environment, use SCCM.

To learn more about what SCCM provides, check out this NinjaOne vs. SCCM comparison.

SCCM, now Configuration Manager, is slowly integrating with Intune, offering the best of both worlds in both on-premises and cloud integrations as well as allowing organizations to manage their devices more efficiently across hybrid environments.

As such, for enterprises—especially those handling devices across operating systems—that aim to migrate from SCCM as their sole device management tool, the solution may be to use Intune for managing their Windows endpoints and to integrate it with a reliable third-party solution for maintaining and securing the rest of their IT infrastructure.

Simplify IT for today’s hybrid workplace with NinjaOne’s remote and on-premises device management solution.

Learn more about NinjaOne Endpoint Management.

Use NinjaOne alongside Intune for remote endpoint management

Together with Microsoft Intune, NinjaOne delivers unified and intelligent endpoint management across device types and operating systems.

How does the latter help accomplish this? NinjaOne Endpoint Management uses a cloud-based centralized console to manage your users, endpoints (Intune-hosted and otherwise), and infrastructure, allowing for fast and secure remote access.

Moreover, its ability to securely and seamlessly monitor and manage endpoints in a single pane of glass as well as drive radical efficiency from day one via automation is why thousands of clients worldwide trust NinjaOne for their endpoint management needs.

Overall, the integration between Intune and NinjaOne enables organizations to utilize a single platform that

  • simplifies endpoint management,
  • reduces tool sprawl, and
  • accelerates IT response.

NinjaOne’s IT management software has no forced commitments and no hidden fees. If you’re ready, request a free quote, sign up for a 14-day free trial, or watch a demo.

FAQs

Not exactly. Microsoft Intune isn’t replacing SCCM, now called Configuration Manager. Both tools continue to be supported and developed.

While Intune is primarily designed for mobile and modern Windows devices, it can also manage some server-class Windows systems for compliance and configuration tasks.  

Both solutions are enterprise-grade and integrate with Microsoft Defender and conditional access. Intune provides cloud-based security and zero-trust controls, while SCCM secures devices within on-premises networks using granular policies and role-based access. 

Yes. Many IT teams use NinjaOne alongside Intune or SCCM to

  • unify device visibility,
  • automate patching, and
  • manage non-Microsoft operating systems.

Integration reduces tool sprawl and simplifies management across hybrid or remote environments.

NinjaOne is a third-party, cloud-native endpoint management platform. Unlike Intune or SCCM, it supports cross-platform device management (Windows, macOS, Linux) with built-in remote access, automation, and monitoring without needing Microsoft infrastructure. 

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